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Hic juicebox software#

Visit to view example reports or perform your on-line analysis (included with ProxiMeta kits).

Your data and results stored for free, forever.

Custom analyses and product extensions are available.

Hic juicebox software#

Able to use our most-published algorithms, or the latest open-source metagenome deconvolution software if desirable.

stool, swabs, soil, or any type of water sample)

Detects cellular abundance as low as 0.02% (1 in 5,000 cells) in a variety of sample types (e.g.

Works on eukaryotes as well as prokaryotes and archaea.

Only software able to accurately associate hosts with mobile elements using raw, uncultured samples.

Only Hi-C metagenome deconvolution software that includes comprehensive taxonomic, gene content, and novelty reporting.

Only commercial Hi-C metagenome deconvolution service.

Most published Hi-C metagenome deconvolution software.

The platform is designed to give you more than just a taxonomic list of what is in your sample or a collection of genome FASTAs it includes reports that provides more context, allows for genome annotation, genome comparisons, and integration with several other industry-leading deconvolution tools. Because Hi-C (proximity ligation) provides direct measurements of DNA sequences present in the same cell in vivo, the ProxiMeta Platform also enables host attribution for mobile elements, such as plasmids, phages and antibiotic resistance genes (ARGs).

Unlike 16S-based analysis, Hi-C data does not rely on any a priori information to make sense of metagenomic communities, and produces proximity-assembled genomes (PAGs) for eukaryotes, prokaryotes, and archaea. Unlike whole-genome sequencing (WGS) binning methods, which rely on statistical assumptions about parameters such as k-mer frequency and coverage, Hi-C data enables metagenomic deconvolution based on true biological measurements.

Use the most-published Hi-C metagenome deconvolution software to make sense of your microbiome samples